Selected Publications


papers: 2017, 2016, 2015, 2014, 2013, 2012, 2011, 2010, 2009, 2008, 2007, 2006, 2005, older, all
other: book chapters


NOTE: The copyrights to these publications are held by their publishers. The pdf files provided here are for personal use, only. They may not be reposted on any other web site or used for any other purpose without the permission of the appropriate publisher.

2017

VUKOMANOVIĆ, Marija, ŽUNIČ, Vojka, KUNEJ, Špela, JANČAR, Boštjan, JEVERICA, Samo, PODLIPEC, Rok, SUVOROV, Danilo.
Nano-engineering the Antimicrobial Spectrum of Lantibiotics: Activity of Nisin against Gram Negative Bacteria
Scientific Reports, 2017, vol. 7, 4324, doi:  10.1038/s41598-017-04670-0.

2016

PAJK, Stane, ŽIVEC, Matej, ŠINK, Roman, SOSIČ, Izidor, NEU, Margarete, CHUNG, Chun-wa, MARTÍNEZ-HOYOS, María, PÉREZ-HERRÁN, Esther, ÁLVAREZ-GÓMEZ, Daniel, ÁLVAREZ-RUÍZ, Emilio, MENDOZA-LOSANA, Alfonso, CASTRO-PICHEL, Julia, BARROS, David, BALLELL-PAGES, Lluís, YOUNG, Robert J., CONVERY, Maire A., ENCINAS, Lourdes, GOBEC, Stanislav.
New direct inhibitors of InhA with antimycobacterial activity based on a tetrahydropyran scaffold.
European Journal of Medicinal Chemistry, 2016, vol. 112, p. 252-257, doi:  10.1016/j.ejmech.2016.02.008 (pdf).

SEDMAK, Ivan, URBANČIČ, Iztok, PODLIPEC, Rok,ŠTRANCAR, Janez, MORTIER, Michel, GOLOBIČ, Iztok.
Submicron thermal imaging of a nucleate boiling process using fluorescence microscopy.
Energy, 2016, vol. 109, p. 436-445, ilustr., doi:  10.1016/j.energy.2016.04.121 (pdf).

2015

ARSOV, Zoran, ŠVAJGER, Urban, MRAVLJAK, Janez, PAJK, Stane, KOTAR, Anita, URBANČIČ, Iztok, ŠTRANCAR, Janez, ANDERLUH, Marko.
Internalization and accumulation in dendritic cells of a small pH-activatable glycomimetic fluorescent probe as revealed by spectral detection.
ChemBioChem, 2015, vol. 16, no. 18, p. 2660-2667, doi: 10.1002/cbic.201500376 (pdf).

GARVAS, Maja, TESTEN, Anže, UMEK, Polona, GLOTER, Alexandre, KOKLIČ, Tilen, ŠTRANCAR, Janez.
Protein corona prevents TiO2 phototoxicity.
PLOS ONE, 2015, vol. 10, no. 6, p. e0129577-1-17, doi: 10.1371/journal.pone.0129577 (pdf).

TESTEN, Anže, PODLIPEC, Rok, MRAVLJAK, Janez, ORTHMANN, Andrea, ŠENTJURC, Marjeta, ZEISIG, Reiner, ŠTRANCAR, Janez, KOKLIČ, Tilen.
How perifosine affects liposome-encapsulated drug delivery across a cell barrier.
Ther. Deliv., 2015, vol. 7, no. 4, p. 423-441, doi: 10.4155/TDE.14.127 (pdf).

PODLIPEC, Rok, ŠTRANCAR, Janez.
Cell-scaffold adhesion dynamics measured in first seconds predicts cell growth on days scale – optical tweezers study.
ACS Appl. Mater. Interfaces, 2015, vol. 7, no. 12, p. 6782-6791, doi: 10.1021/acsami.5b00235 (pdf).

KOKLIČ, Tilen, CHATTOPADHYAY, Rima, MAJUMDER, Rinku, LENTZ, Barry R.
Factor Xa dimerization competes with prothrombinase complex formation on platelet-like membrane surfaces.
Biochem. j., 2015, vol. 467, p. 37-46, doi: 10.1042/BJ20141177.

2014

PAJK, Stane.
Synthesis and fluorescence properties of environment-sensitive 7-(diethylamino)coumarin derivatives.
Tetrahedron letters, 2014, vol. 55, iss. 44, p. 6044-6047, doi:  10.1016/j.tetlet.2014.09.019.

SMITHIES, Oliver, LAWRENCE, Marlon, TESTEN, Anže, HORNE, Lloyd P., WILDER, Jennifer, ALTENBURG, Michael, BLEASDALE, Ben, MAEDA, Nobuyo, KOKLIČ, Tilen.
Stable oligomeric clusters of gold nanoparticles: preparation, size distribution, derivatization, and physical and biological properties.
Langmuir, 2014, vol. 30, no. 44, p. 13394-13404, doi: 10.1021/la5032637

URBANČIČ, Iztok, LJUBETIČ, Ajasja, ŠTRANCAR, Janez.
Resolving internal motional correlations to complete the conformational entropy meter.
J. Phys. Chem. Lett., 2014, vol. 5, no. 20, p. 3593-3600, doi: 10.1021/jz5020828 (pdf).

PODLIPEC, Rok, GORGIEVA, Selestina, JURAŠIN, Darija, URBANČIČ, Iztok, KOKOL, Vanja, ŠTRANCAR, Janez.
Molecular mobility of scaffolds` biopolymers influences cell growth.
ACS Appl. Mater. Interfaces, 2014, vol. 6, no. 18, p. 15980–15990, doi: 10.1021/am5037719 (pdf).

KOKLIČ, Tilen, MAJUMDER, Rinku, LENTZ, Barry R.
Ca2+ switches the effect of ps-containing membranes on factor Xa from activating to inhibiting: implications for initiation of blood coagulation.
Biochem. j., 2014, vol. 462, no. 3, p. 591-601, doi: 10.1042/BJ20140130.

KOKLIČ, Tilen.
Perifosine induced release of contents of trans cell-barrier transport efficient liposomes.
Chem. phys. lipids, 2014, vol. 183, p. 50-59, doi: 10.1016/j.chemphyslip.2014.05.006.

MAJUMDER, Rinku, KOKLIČ, Tilen, SENGUPTA, Tanusree, COLE, Daud, CHATTOPADHYAY, Rima, BISWAS, Subir, MONROE, Dougald McDougald, LENTZ, Barry R.
Soluble phosphatidylserine binds to two sites on human Factor IXa in a Ca2+ dependent fashion to specifically regulate structure and activity.
PLOS ONE, 2014, vol. 9, no. 6, p. 100006-1-100006-10, doi: 10.1371/journal.pone.0100006 (pdf).

LJUBETIČ, Ajasja, URBANČIČ, Iztok, ŠTRANCAR, Janez.
Recovering position-dependent diffusion from biased molecular dynamics simulations.
J. chem. phys., 2014, vol. 140, 084109, doi: 10.1063/1.4866448 (pdf).

GORGIEVA, Selestina, ŠTRANCAR, Janez, KOKOL, Vanja.
Evaluation of surface/interface-related physicochemical and microstructural properties of gelatin 3D scaffolds, and their influence on fibroblast growth and morphology.
J. biomed. mater. res. A, 2014, vol. 00A, p. 1-12, doi: 10.1002/jbm.a.35076.

2013

URBANČIČ, Iztok, ARSOV, Zoran, LJUBETIČ, Ajasja, BIGLINO, Daniele, ŠTRANCAR, Janez.
Bleaching-corrected fluorescence microspectroscopy with nanometer peak position resolution.
Opt. express, 2013, vol. 21, no. 21, p. 25291-25306, doi: 10.1364/OE.21.025291 (pdf).

MRAVLJAK, Janez, OJSTERŠEK, Tadej, PAJK, Stane, SOLLNER DOLENC, Marija.
Coumarin-based dual fluorescent spin-probes.
Tetrahedron lett., 2013, vol. 54, no. 38, p. 5236-5238, doi: 10.1016/j.tetlet.2013.07.084.

URBANČIČ, Iztok, LJUBETIČ, Ajasja, ARSOV, Zoran, ŠTRANCAR, Janez.
Coexistence of probe conformations in lipid phases: a polarized fluorescence microspectroscopy study.
Biophys. j., 2013, vol. 105, no. 4, p. 919-927, doi: 10.1016/j.bpj.2013.07.005 (pdf).

MLAKAR, Jana, ŠTRANCAR, Janez.
Temperature and humidity profiles in passive-house building blocks.
Build. environ., 2013, vol. 60, p. 185-193, doi: 10.1016/j.buildenv.2012.11.018.

MAJUMDER, Rinku, KOKLIČ, Tilen, REZAIE, Agheleh, LENTZ, Barry R.
Phosphatidylserine-induced factor Xa dimerization and binding to factor Va are competing processes in solution.
Biochemistry, 2013, vol. 52, issue 1, p. 143-151, doi: 10.1021/bi301239z.

2012

KOKLIČ, Tilen, ŠTRANCAR, Janez.
Lysolipid containing liposomes for transendothelial drug delivery.
BMC research notes, 2012, vol. 5, art. no. 139, doi: 10.1186/1756-0500-5-179.

PODLIPEC, Rok, KOKLIČ, Tilen, ŠTRANCAR, Janez, MRAVLJAK, Janez, ŠENTJURC, Marjeta.
Influence of cancerostatic perifosine on membrane fluidity of liposomes and different cell lines as measured by electron paramagnetic resonance.
Croat. med. j., 2012, vol. 53, no. 6, p. 558-567 doi: 10.3325/cmj.2012.53.558.

2011

ARSOV, Zoran, URBANČIČ, Iztok, GARVAS, Maja, BIGLINO, Daniele, LJUBETIČ, Ajasja, KOKLIČ, Tilen, ŠTRANCAR, Janez.
Fluorescence microspectroscopy as a tool to study mechanism of nanoparticles delivery into living cancer cells.
Biomed. opt. express, 2011, vol. 2, no. 8, p. 2083-2095, doi: 10.1364/BOE.2.002083 (pdf).

BOULGAROPOULOS, Beate, ARSOV, Zoran, LAGGNER, Peter, PABST, Georg.
Stable and unstable lipid domains in ceramide-containing membranes.
Biophys. j., 2011, vol. 100, no. 9, p. 2160-2168, doi: 10.1016/j.bpj.2011.03.013.

KUŻDŻAŁ, Michał, WESOŁOWSKA, Olga, ŠTRANCAR, Janez, MICHALAK, Krystyna.
Fluorescence and ESR spectroscopy studies on the interaction of isoflavone genistein with biological and model membranes.
Chem. phys. lipids, 2011, vol. 164, no. 4, p. 283-291, doi: 10.1016/j.chemphyslip.2011.03.001.

MLAKAR, Jana, ŠTRANCAR, Janez.
Overheating in residential passive house: solution strategies revealed and confirmed through data analysis and simulations.
Energy build., 2011, vol. 43, no. 6, p. 1443-1451, doi: 10.1016/j.enbuild.2011.02.008.

KOKLIČ, Tilen, ŠENTJURC, Marjeta, ZEISIG, Reiner.
Determination of the amount of micelles in alkylphospholipid liposome formulations with electron paramagnetic resonance method.
Journal of liposome research, 2011, vol. 21, issue 1, p. 1-8, doi: 10.3109/08982101003596133.

PAJK, Stane, GARVAS, Maja, ŠTRANCAR, Janez, PEČAR, Slavko.
Nitroxide-fluorophore double probes: a potential tool for studying membrane heterogeneity by ESR and fluorescence.
Organic and Biomolecular Chemistry, 2011, vol. 9, issue 11, p. 4150-4159, doi: 10.1039/C0OB01173H.

2010

ŠTRANCAR, Janez, PETELIN, Milan.
Simulation support to EPR-based dentin characterization.
Appl. magn. reson., 2010, issue 1-4, vol. 37, p. 751-761, doi:  0.1007/s00723-009-0061-z.

REBOLJ, Katja, BAKRAČ, Biserka, GARVAS, Maja, OTA, Katja, ŠENTJURC, Marjeta, MAČEK, Peter, SEPČIĆ, Kristina.
EPR and FTIR studies reveal the importance of highly ordered sterol-enriched membrane domains for ostreolysin activity.
Biochim. biophys. acta, Biomembr., 2010, vol. 1798, no. 5, p. 891-902. doi: 10.1016/j.bbamem.2010.01.016.

KAVALENKA, Aleh A., URBANČIČ, Iztok, BELLE, Valérie, SOUGER, Sabrina, CONSTANZO, Stéphanie, KURE, Sandra, FOURNEL, André, LONGHI, Sonia, GUIGLIARELLI, Bruno, ŠTRANCAR, Janez.
Conformational analysis of the partially disordered measles virus NTAIL-XD complex by SDSL EPR spectroscopy.
Biophys. j., 2010, vol. 98, no. 6, p. 1055-1064, doi: 10.1016/j.bpj.2009.11.036 (pdf).

BATISTA, Urška, GARVAS, Maja, NEMEC, Marjanca, SCHARA, Milan Valter, VERANIČ, Peter, KOKLIČ, Tilen.
Effects of different detachment procedures on viability, nitroxide reduction kinetics, and plasma membrane heterogeneity of V-79 cells.
Cell Biol Int, 2010, letn. 34, št. 6, p. 663-668, doi: 10.1042/CBI20090276.

OMERZU, Aleš, ANŽELAK, Bernarda, TUREL, Iztok, ŠTRANCAR, Janez, POTOČNIK, Anton, ARČON, Denis, ARČON, Iztok, MIHAILOVIĆ, Dragan, MATSUI, Hiroshi.
Strong correlations in highly electron-doped Zn(II)-DNA complexes.
Phys. rev. lett., 16. apr. 2010, vol. 104, no. 15, p. 156804-1-156804-4.

ŠTRANCAR, Janez, KAVALENKA, Aleh A., URBANČIČ, Iztok, LJUBETIČ, Ajasja, HEMMINGA, Marcus A.
SDSL-ESR-based protein structure characterization.
Eur. biophys. j., 2010, vol. 39, no. 4, p. 499-511, doi: 10.1007/s00249-009-0510-5 (pdf).

2009

NEMEC, Ana, PAVLICA, Zlatko, CROSSLEY, D. A., ZDOVC, Irena, ERŽEN, Damijan, ŠENTJURC, Marjeta, NEMEC, Marjanca, PETELIN, Milan.
Single oral inoculation with Escherichia coli (ATCC 25922) stimulates generalised production of nitric oxide in mice.
Acta Vet. Hung. (Bp. 1983), 2009, vol. 57, no. 1, p. 127-138.

KAVALENKA, Aleh A., SPRUIJT, Ruud B., WOLFS, Cor J.A.M., ŠTRANCAR, Janez, CROCE, Roberta, HEMMINGA, Marcus A., VAN AMERONGEN, Herbert.
Site-directed spin-labeling study of the light-harvesting comlex CP29.
Biophys. j., 2009, vol. 96, no. 9, p. 3620-3628, doi: 10.1016/j.bpj.2009.01.038.

KOKLIČ, Tilen, MAJUMDER, Rinku, WEINREB, Gabriel E., LENTZ, Barry R.
Factor Xa binding to phosphatidylserine-containing membranes produces an inactive membrane-bound dimer.
Biophys. j., 2009, vol. 97, no. 8, p. 2232-2241.

ARSOV, Zoran, RAPPOLT, Michael, GRDADOLNIK, Jože.
Weakened hydrogen bonds in water confined between lipid bilayers: the existence of a long-range attractive hydration force.
ChemPhysChem, 2009, vol. 10, no. 9/10, p. 1438-1441, doi: 10.1002/cphc.200900185.

ŠTRANCAR, Janez, KAVALENKA, Aleh A., ZIHERL, Primož, STOPAR, David, HEMMINGA, Marcus A.
Analysis of side chain rotational restrictions of membrane-embedded proteins by spin-label ESR spectroscopy.
J. magn. reson. (San Diego, Calif., 1997), 2009, vol. 197, no. 2, p. 245-248.

MRAVLJAK, Janez, PEČAR, Slavko.
A new glucosamine-containing amphiphilic spin probe.
Tetrahedron lett., 2009, vol. 50, no. 5, p. 567-569.

2008

ARSOV, Zoran, QUARONI, Luca.
Detection of lipid phase coexistence and lipid interactions in sphingomyelin/cholesterol membranes by ATR-FTIR spectroscopy.
Biochim. biophys. acta, Biomembr., 2008, vol. 1778, no. 4, p. 880-889.

KOKLIČ, Tilen, ZEISIG, Reiner, ŠENTJURC, Marjeta.
Interaction of alkylphospholipid liposomes with MT-3 breat-cancer cells depends critically on cholesterol concentration.
Biochim. biophys. acta, Biomembr., 2008, vol. 1778, no. 12, p. 2682-2689.

ARSOV, Zoran, NEMEC, Marjanca, SCHARA, Milan Valter, JOHANSSON, Henrik, LANGEL, Ülo, ZORKO, Matjaž.
Cholesterol prevents interaction of the cell-penetrating peptide transportan with model lipid membranes.
J. pept. sci., 2008, vol. 14, no. 12, p. 1303-1308.

WOLLNY, Götz, BRÜNDERMANN, Erik, ARSOV, Zoran, QUARONI, Luca, HAVENITH, Martina.
Nanoscale depth resolution in scanning near-field infrared microscopy.
Opt. express, 2008, vol. 16, no. 10, p. 7453-7459.

DOGŠA, Iztok, ŠTRANCAR, Janez, LAGGNER, Peter, STOPAR, David.
Efficient modeling of polysaccharide conformations based on Small-Angle X-ray Scattering experimental data.
Polymer (Guildf.), 2008, vol. 49, p. 1398-1406.

BELLE, Valerie, ROUGER, Sabrina, CONSTANZO, Stéphanie, LIQUIERE, Elodie, ŠTRANCAR, Janez, GUIGLIARELLI, Bruno, FOURNEL, André, LONGHI, Sonia.
Mapping [alpha]-helical induced folding within the intrinsically disordered C-terminal domain of the measles virus nucleoprotein by site-directed spin-labeling EPR spectroscopy.
Proteins, 2008, issue 4, vol. 73, p. 973-988, doi: 10.1002/prot.22125.

2007

ZEISIG, Reiner, KOKLIČ, Tilen, WIESNER, Burkhard, FICHTNER, Iduna, ŠENTJURC, Marjeta.
Increase in fluidity in the membrane of MT3 breast cancer cells correlates with enhanced cell adhesion in vitro and increased lung metastatis in NOD/SCID mice.
Arch. biochem. biophys., 2007, vol. 459, p. 98-106.

PABST, Georg, HODŽIĆ, Aden, ŠTRANCAR, Janez, DANNER, Sabine, RAPPOLT, Michael, LAGGNER, Peter.
Rigidification of neutral lipid bilayers in the presence of salts.
Biophys. j., 2007, vol. 93, no. 8, p. 2699-2696.

ARSOV, Zoran, QUARONI, Luca.
Direct interaction between cholesterol and phosphatidylcholines in hydrated membranes relealed by ATR-FTIR spectroscopy.
Chem. phys. lipids, 2007, vol. 150, p. 35-48.

POKLAR ULRIH, Nataša, ADAMLJE, Urška, NEMEC, Marjanca, ŠENTJURC, Marjeta.
Temperature- and pH-induced structural changes in the membrane of the hyperthermophilic archaeon Aeropyrum pernix K1.
J. membr. biol., 2007, issues 1/3, vol. 219, p. 1-8.

2006

STOPAR, David, ŠTRANCAR, Janez, SPRUIJT, Ruud B., HEMMINGA, Marcus A.
Motional restrictions of membrane proteins: a site-directed spin labeling study.
Biophys. j., 2006, vol. 91, no. 9, p. 3341-3348, doi: 10.1529/biophysj.106.090308.

KANDUŠER, Maša, ŠENTJURC, Marjeta, MIKLAVČIČ, Damijan.
Cell membrane fluidity related to electroporation and resealing.
Eur. biophys. j., Feb. 2006, vol. 35, no. 3, p. 196-204, ilustr.

MRAVLJAK, Janez, KONC, Janez, HODOŠČEK, Milan, ŠOLMAJER, Tomaž, PEČAR, Slavko.
Spin-labeled alkylphospholipids in a dipalmitoylphosphatidylcholine bilayer: molecular dynamics simulations.
J. phys. chem., B Condens. mater. surf. interfaces biophys., 2006, vol. 110, no. 51, p. 25559-25561.

2005

ARSOV, Zoran, ZORKO, Matjaž, SCHARA, Milan Valter.
Inhibition of erythrocyte acetylcholinesterase by n-butanol at high concentrations.
Arch. biochem. biophys., 2005, vol. 437, p. 78-84.

DANEVČIČ, Tjaša, RILFORS, Leif, ŠTRANCAR, Janez, LINDBLOM, Göran, STOPAR, David.
Effects of lipid composition on the membrane activity and lipid phase behaviour of Vibrio sp. DSM14379 cells grown at various NaCl concentrations.
Biochim. biophys. acta, Biomembr., 2005, vol. 1712, p. 1-8.

ŠTRANCAR, Janez, KOKLIČ, Tilen, ARSOV, Zoran, FILIPIČ, Bogdan, STOPAR, David, HEMMINGA, Marcus A.
Spin label EPR-based characterization of biosystem complexity.
J. chem. inf. mod., 2005, vol. 45, no. 2, p. 394-406.

KAVALENKA, Aleh A., FILIPIČ, Bogdan, HEMMINGA, Marcus A., ŠTRANCAR, Janez.
Speeding up a genetic algorithm for EPR-based spin label characterization of biosystem complexity.
J. chem. inf. mod., 2005, vol. 45, no. 6, p. 1628-1635.

MRAVLJAK, Janez, ZEISIG, Reiner, PEČAR, Slavko.
Synthesis and biological evaluation of spin-labelled alkylphospholipid analogs.
J. med. chem., 2005, vol. 48, no. 20, p. 6393-6399.

Back to the top


Book chapters

ARSOV, Zoran.
Long-range lipid-water interaction as observed by ATR-FTIR spectroscopy.
In: DISALVO, E. Anibal (ed.). Membrane hydration: The role of water in the structure and function of biological membranes. Cham: Springer, 2015, p. 127-159, doi: 10.1007/978-3-319-19060-0_6 (pdf).

ŠTRANCAR, Janez, KOKOL, Vanja.
EPR spectroscopy of biopolymers.
In: THOMAS, Sabu (ed.), DURAND, Dominique (ed.), CHASSENIEUX, Christophe (ed.), JYOTISHKUMAR, P. (ed.). Handbook of biopolymer-based materials : from blends and composites to gels and complex networks. Vol. 2. Weinheim: Wiley, 2013, p. 443-472, doi: 10.1002/9783527652457.ch15.

KOKLIČ, Tilen, PODLIPEC, Rok, MRAVLJAK, Janez, GARVAS, Maja, ŠENTJURC, Marjeta, ZEISIG, Reiner.
Interaction of alkylphospholipid formulations with breast cancer cells in the context of anticancer drug development.
In: GUNDUZ, Mehmet (ed.), GUNDUZ, Esra (ed.). Breast cancer - focusing tumor microenvironment, stem cells and metastasis.. Rijeka: InTech, 2011, p. 361-384.

ŠTRANCAR, Janez, ARSOV, Zoran.
Application of spin-labeling EPR and ATR-FTIR spectroscopies to the study of membrane heterogeneity.
In: OTTOVA-LEITMANNOVA, Angelica (ed.). Advances in planar lipid bilayers and liposomes. Vol. 6. Amsterdam [etc.]: Academic Press, Elsevier Science, cop. 2008, p. 139-163.

ŠTRANCAR, Janez.
EPRSIM-C: a spectral analysis package.
In: BERLINER, Lawrence J. (ed.), HEMMINGA, Marcus A. ESR spectroscopy in membrane biophysics, (Biological magnetic resonance, vol. 27). New York: Springer, cop. 2007, p. 323-338.

ŠTRANCAR, Janez.
Advanced ESR spectroscopy in membrane biophysics.
In: BERLINER, Lawrence J. (ed.), HEMMINGA, Marcus A. ESR spectroscopy in membrane biophysics, (Biological magnetic resonance, vol. 27). New York: Springer, cop. 2007, p. 49-89.

NOETHIG-LASLO, Vesna, ŠENTJURC, Marjeta.
Transmembrane polarity profile of lipid membranes.
In: OTTOVA-LEITMANNOVA, Angelica (ed.). Advances in planar lipid bilayers and liposomes. Vol. 5. Amsterdam [etc.]: Elsevier, cop. 2007, p. 365-415.

Back to the top